Manipulating and analysing protein structures and models. There are a large number of tools available for visualising, What software can I use to visualise/analyse/manipulate my protein We stopped using SCOP entries when the original SCOP database was no longer being updated (in 2010), so any models starting with a "d" are at least that old. The chain in the entry and the final character tells you which SCOP domain the entry is derived from. Otherwise the reading is the same - a four character code for the PDB entry, one character for The "_" (underscore character) would tell you which SCOP domain thisĬhain is in, but we gave up using this in 2010!Īn initial "d" means that this is a domain from a SCOP entry, but The initial "c" indicates this protein is a whole chain taken from the PDB, with PDB identifier 1ut0 and chain identifier A. What does the code for each solution mean?Įach solution in the list has a code something like "c1ut0A_" or How can I model the structural effect of point What does the code for each solution mean?ģ. Protein Homology/analog Y Recognition Engine V 2.0ġ.
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